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The SciBear team analyzes all types of microbial genome sequencing data. We provide efficient, fast and reliable analysis of your data. Our specialized SciBear analysis report is designed to be easily incorporated into scientific manuscripts.
Demo report
Please give us your name and email address, and our project manager will get in contact with you with a sample report
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PRODUCTS
SERVICES WE OFFER:
New microbial species are discovered almost every day. High-quality assembly and annotation of the microbial genome is the basis for successful future research. SciBear has developed a pipeline for de novo assembly and annotation of microbial genomes.
Raw DNA sequencing reads are the only input we need from you. We perform a quality check on your DNA reads, assemble the microbial genome and analyze it for completeness and potential contamination. We will determine the taxonomic position of the assembled genome and its average nucleotide identity (ANI) to the nearest microbial genome. We will annotate the genome, evaluate CRISPRs, and analyze COGs and Pfam domains. Your SciBear report will provide results that meet the Minimum Information about the Genome Sequence (MIGS) specification (doi: 10.1038/nbt1360).
Raw DNA sequencing reads are the only input we need from you. We perform a quality check on your DNA reads, assemble the microbial genome and analyze it for completeness and potential contamination. We will determine the taxonomic position of the assembled genome and its average nucleotide identity (ANI) to the nearest microbial genome. We will annotate the genome, evaluate CRISPRs, and analyze COGs and Pfam domains. Your SciBear report will provide results that meet the Minimum Information about the Genome Sequence (MIGS) specification (doi: 10.1038/nbt1360).
De novo assembly and annotation of microbial genomes
For the study of microbial communities, SciBear has developed a pipeline for microbiome analysis using a metagenomic approach. When genetic material has been extracted directly from environmental or host-associated samples, metagenomic analysis is required to explore the microbial communities.
The composition of the microbial community and its functional potential can be determined based on the microbial DNA recovered from the samples. Raw DNA sequencing reads are the only input we need from you. After a quality check and read cleaning, we assemble and annotate the metagenome to determine the metabolic capabilities of the analyzed community.
To reconstruct the microbial genomes (Metagenome-Assembled Genomes or MAGs) of a given sample, we perform binning of the metagenome using at least three different methods.
The composition of the microbial community and its functional potential can be determined based on the microbial DNA recovered from the samples. Raw DNA sequencing reads are the only input we need from you. After a quality check and read cleaning, we assemble and annotate the metagenome to determine the metabolic capabilities of the analyzed community.
To reconstruct the microbial genomes (Metagenome-Assembled Genomes or MAGs) of a given sample, we perform binning of the metagenome using at least three different methods.
Metagenomic analysis of microbiomes
Pan-genomic analysis is the latest approach to decipher the entire genetic content of a set of genomes. Pan-genomic analysis represents the entire genetic variability of a group of organisms. Pan-genomic analysis can be used to find homologous genes and predict the metabolic properties of a microorganism.
Pan-genomic analysis reveals the diverse genomic features that explain a range of microbial adaptations to different environments. Pan-genomic analysis is essential for proper taxonomy or reclassification of species.
We are happy to help you with the pan-genomic analysis of microorganisms of your interest. To perform this analysis, we only need information about the group of microbes whose genomes you want to compare and which metabolic pathways are of particular interest.
Pan-genomic analysis reveals the diverse genomic features that explain a range of microbial adaptations to different environments. Pan-genomic analysis is essential for proper taxonomy or reclassification of species.
We are happy to help you with the pan-genomic analysis of microorganisms of your interest. To perform this analysis, we only need information about the group of microbes whose genomes you want to compare and which metabolic pathways are of particular interest.
Microbial pan-genome analysis
Evolutionary relationships between different microbial species can be explained by phylogenetic analysis. Phylogenetic characterization is critical for contextualizing genomes without prior phenotypic information, and for determining their genetic novelty and genotype-phenotype relationships.
SciBear's team has extensive experience in both reclassifying existing and describing new microbial taxa, as evidenced by publications in peer-reviewed journals such as the International Journal of Systematic and Evolutionary Microbiology (IJSEM) and Bergey's Manual of Systematics of Archaea and Bacteria (BMSAB). We are happy to share our experience and help you with your phylogenetic analysis. The object of analysis can be phylogenetic markers (e.g. 16S rRNA), concatenated single-copy core genes of analyzed genomes, or any gene or group of genes of interest.
SciBear's team has extensive experience in both reclassifying existing and describing new microbial taxa, as evidenced by publications in peer-reviewed journals such as the International Journal of Systematic and Evolutionary Microbiology (IJSEM) and Bergey's Manual of Systematics of Archaea and Bacteria (BMSAB). We are happy to share our experience and help you with your phylogenetic analysis. The object of analysis can be phylogenetic markers (e.g. 16S rRNA), concatenated single-copy core genes of analyzed genomes, or any gene or group of genes of interest.
Microbial phylogenetics
Send us your data
Now relax and let us do the work
Your results!
As soon as we have a clear idea of which output format you want, we'll request your raw data to get started. Your sequencing results can be shared with us in any way convenient for you (for example, through a link to Dropbox, by FTP, etc.)
Your report will be generated within 3 days! While you wait, you can plan your next research project and think about big scientific ideas.
Your results will be delivered in the form of a FASTA file containing your genome assembly, a brief report with the main outcomes, and a detailed report (you can see a sample report here)
HOW DOES IT WORK?
Just fill in the form with the key information about your request, and we will reply to you as soon as possible. Feel free to ask any questions by e-mail to: info@sci-bear.com
Just press the "order now" button and fill in the form
WHAT OUR CLIENTS SAY ABOUT US
PhD in Biology (Lomonosov Moscow State University)
Specialist in microbial genomics, systematics, and evolution. Co-author on more than 100 publications in peer-reviewed scientific journals.
Specialist in microbial genomics, systematics, and evolution. Co-author on more than 100 publications in peer-reviewed scientific journals.
Master of Applied Mathematics and Informatics (Moscow Institute of Physics and Technology)
Bioinformatics analyst, software engineer. Co-author on more than 20 publications in peer-reviewed scientific journals.
Master of Science in Biology (Lomonosov Moscow State University)
Biologist, specialist in project management. Co-author of 5 patents.
DENIS GROUZDEV
MARIA KRUTKINA
KATERYNA PANTIUKH
TEAM
KIRILL LOBANOV
Master of Science in Finance and Supply Chain Management (Plekhanov Russian University of Economics)
Sourcing Professional with 7 years of experience in supply chain practices for different groups of commodities.
Sourcing Professional with 7 years of experience in supply chain practices for different groups of commodities.
OUR NEWS
HBC Kleikamp, D Grouzdev, P Schaasberg, R van Valderen, R van der Zwaan, R van de Wijgaart, Y Lin, B Abbas, M Pronk, MCM van Loosdrecht, M Pabst
Metaproteomics, metagenomics and 16S rRNA sequencing provide different perspectives on the aerobic granular sludge microbiome
Water Research. 2023; 246, 120700. doi:10.1016/j.watres.2023.120700
Y Boltyanskaya, T Zhilina, D Grouzdev, E Detkova, N Pimenov, V Kevbrin
Halanaerobium polyolivorans sp. nov.—a novel halophilic alkalitolerant bacterium capable of polyol degradation: physiological properties and genomic insights
Microorganisms. 2023; 11 (9), 2325. doi: 10.3390/microorganisms11092325
AP Ershov, TL Babich, DS Grouzdev, DS Sokolova, EM Semenova, AN Avtukh, AB Poltaraus, EA Ianutsevich, TN Nazina
Genome analysis and potential ecological functions of members of the genus Ensifer from subsurface environments and description of Ensifer oleiphilus sp. nov.
Microorganisms. 2023; 11 (9), 2314. doi:10.3390/microorganisms11092314
S Parshina, E Zhuravleva, AA Nikitina, D Grouzdev, N Kostrikina, V Kevbrin, A Novikov, D Kopitsyn, T Kolganova, R Baslerov, AN Nozhevnikova, Yu Litti
Syntrophic growth of Biomaibacter acetigenes strain SP2 on lactate and glycerol
Fermentation. 2023; 9 (6), 557. doi:10.3390/fermentation9060557
YV Boltyanskaya, VV Kevbrin, DS Grouzdev, EN Detkova, VV Koziaeva, AA Novikov, TN Zhilina
Halonatronomonas betaini gen. nov., sp. nov., a haloalkaliphilic isolate from soda lake capable of betaine degradation and proposal of Halarsenatibacteraceae fam. nov. and Halothermotrichaceae fam. nov. within the order Halanaerobiales
Systematic and Applied Microbiology. 2023; 46 (3), 126407. doi:10.1016/j.syapm.2023.126407
VV Koziaeva, DY Sorokin, TV Kolganova, DS Grouzdev
Magnetospirillum sulfuroxidans sp. nov., capable of sulfur-dependent lithoautotrophy and a taxonomic reevaluation of the order Rhodospirillales
Systematic and Applied Microbiology. 2023; 46 (3), 126406. doi:10.1016/j.syapm.2023.126406
V Ryzhov, V Deriglazov, D Grouzdev, V Koziaeva, I Kiselev, I Larionov, K Gareev, N Sitkov, T Zimina, Y Marchenko, M Shevtsov
Biogenic nanomagnetic carriers derived from magnetotactic bacteria: magnetic parameters of magnetosomes inside Magnetospirillum spp.
Applied Sciences. 2023; 13(4):2431. doi:10.3390/app13042431
I Kravchenko, D Grouzdev, M Sukhacheva, T Minayeva, A Sirin
Microbial communities of peaty permafrost tundra soils along the gradient of environmental conditions and anthropogenic disturbance in Pechora river delta in the Eastern European Arctic
Diversity. 2023; 15(2):251. doi:10.3390/d15020251
M Uzun, V Koziaeva, M Dziuba, L Alekseeva, M Krutkina, M Sukhacheva, R Baslerov, D Grouzdev
Recovery and genome reconstruction of novel magnetotactic Elusimicrobiota from bog soil
The ISME Journal, 2023 17 (2), 204-214. doi:10.1038/s41396-022-01339-z
AA Nikitina, AY Kallistova, DS Grouzdev, TV Kolganova, AA Kovalev, DA Kovalev, V Panchenko, I Zekker, AN Nozhevnikova, YV Litti
Syntrophic butyrate-oxidizing consortium mitigates acetate inhibition through a shift from acetoclastic to hydrogenotrophic methanogenesis and alleviates VFA Stress in thermophilic anaerobic digestion
Applied Sciences. 2023; 13(1):173. doi:10.3390/app13010173
Metaproteomics, metagenomics and 16S rRNA sequencing provide different perspectives on the aerobic granular sludge microbiome
Water Research. 2023; 246, 120700. doi:10.1016/j.watres.2023.120700
Y Boltyanskaya, T Zhilina, D Grouzdev, E Detkova, N Pimenov, V Kevbrin
Halanaerobium polyolivorans sp. nov.—a novel halophilic alkalitolerant bacterium capable of polyol degradation: physiological properties and genomic insights
Microorganisms. 2023; 11 (9), 2325. doi: 10.3390/microorganisms11092325
AP Ershov, TL Babich, DS Grouzdev, DS Sokolova, EM Semenova, AN Avtukh, AB Poltaraus, EA Ianutsevich, TN Nazina
Genome analysis and potential ecological functions of members of the genus Ensifer from subsurface environments and description of Ensifer oleiphilus sp. nov.
Microorganisms. 2023; 11 (9), 2314. doi:10.3390/microorganisms11092314
S Parshina, E Zhuravleva, AA Nikitina, D Grouzdev, N Kostrikina, V Kevbrin, A Novikov, D Kopitsyn, T Kolganova, R Baslerov, AN Nozhevnikova, Yu Litti
Syntrophic growth of Biomaibacter acetigenes strain SP2 on lactate and glycerol
Fermentation. 2023; 9 (6), 557. doi:10.3390/fermentation9060557
YV Boltyanskaya, VV Kevbrin, DS Grouzdev, EN Detkova, VV Koziaeva, AA Novikov, TN Zhilina
Halonatronomonas betaini gen. nov., sp. nov., a haloalkaliphilic isolate from soda lake capable of betaine degradation and proposal of Halarsenatibacteraceae fam. nov. and Halothermotrichaceae fam. nov. within the order Halanaerobiales
Systematic and Applied Microbiology. 2023; 46 (3), 126407. doi:10.1016/j.syapm.2023.126407
VV Koziaeva, DY Sorokin, TV Kolganova, DS Grouzdev
Magnetospirillum sulfuroxidans sp. nov., capable of sulfur-dependent lithoautotrophy and a taxonomic reevaluation of the order Rhodospirillales
Systematic and Applied Microbiology. 2023; 46 (3), 126406. doi:10.1016/j.syapm.2023.126406
V Ryzhov, V Deriglazov, D Grouzdev, V Koziaeva, I Kiselev, I Larionov, K Gareev, N Sitkov, T Zimina, Y Marchenko, M Shevtsov
Biogenic nanomagnetic carriers derived from magnetotactic bacteria: magnetic parameters of magnetosomes inside Magnetospirillum spp.
Applied Sciences. 2023; 13(4):2431. doi:10.3390/app13042431
I Kravchenko, D Grouzdev, M Sukhacheva, T Minayeva, A Sirin
Microbial communities of peaty permafrost tundra soils along the gradient of environmental conditions and anthropogenic disturbance in Pechora river delta in the Eastern European Arctic
Diversity. 2023; 15(2):251. doi:10.3390/d15020251
M Uzun, V Koziaeva, M Dziuba, L Alekseeva, M Krutkina, M Sukhacheva, R Baslerov, D Grouzdev
Recovery and genome reconstruction of novel magnetotactic Elusimicrobiota from bog soil
The ISME Journal, 2023 17 (2), 204-214. doi:10.1038/s41396-022-01339-z
AA Nikitina, AY Kallistova, DS Grouzdev, TV Kolganova, AA Kovalev, DA Kovalev, V Panchenko, I Zekker, AN Nozhevnikova, YV Litti
Syntrophic butyrate-oxidizing consortium mitigates acetate inhibition through a shift from acetoclastic to hydrogenotrophic methanogenesis and alleviates VFA Stress in thermophilic anaerobic digestion
Applied Sciences. 2023; 13(1):173. doi:10.3390/app13010173
NV Doronina, AA Chemodurova, DS Grouzdev, VV Koziaeva, NV Agafonova, W Shi, L Wu, EN Kaparullina
Ancylobacter moscoviensis sp. nov., novel facultatively methylotrophic bacteria from activated sludge and the reclassification of Starkeya novella (Starkey 1934) Kelly et al. 2000 as Ancylobacter novellus comb. nov., Starkeya koreensis Im et al. 2006 as Ancylobacter koreensis comb.nov., Angulomicrobium tetraedrale Vasil'eva et al. 1986 as Ancylobacter tetraedralis comb. nov., Angulomicrobium amanitiforme Fritz et al. 2004 as Ancylobacter amanitiformis comb. nov., and Methylorhabdus multivorans Doronina et al. 1996 as Ancylobacter multivorans comb. nov., and emended description of the genus Ancylobacter
Antonie van Leeuwenhoek. 2022. doi: 10.1007/s10482-022-01788-8
TL Babich, DS Grouzdev, DS Sokolova, TP Tourova, AB Poltaraus, TN Nazina
Genome analysis of Pollutimonas subterranea gen. nov., sp. nov. and Pollutimonas nitritireducens sp. nov., isolated from nitrate- and radionuclide-contaminated groundwater, and transfer of several Pusillimonas species into three new genera Allopusillimonas, Neopusillimonas, and Mesopusillimonas
Antonie van Leeuwenhoek. 2022. doi: 10.1007/s10482-022-01781-1
L Vasilyeva, D Grouzdev, V Koziaeva, Y Berestovskaya, A Novikov, N Pimenov
Prosthecodimorpha staleyi gen. nov., sp. nov., novel prosthecate bacteria within the family Ancalomicrobiaceae and reclassification of the polyphyletic genus Prosthecomicrobium
Microbiology. 2022, 91 (5), 479-488. doi:10.1134/S0026261722601105
D Grouzdev, V Gaisin, O Lunina, M Krutkina, E Krasnova, D Voronov, R Baslerov, P Sigalevich, A Savvichev, V Gorlenko
Microbial communities of stratified aquatic ecosystems of Kandalaksha Bay (White Sea) shed light on the evolutionary history of green and brown morphotypes of Chlorobiota
FEMS Microbiology Ecology. 2022, 98 (10), fiac103. doi:10.1093/femsec/fiac103
TM Zimina, NO Sitkov, KG Gareev, V Fedorov, D Grouzdev, V Koziaeva, H Gao, SE Combs, M Shevtsov
Biosensors and drug delivery in oncotheranostics using inorganic synthetic and biogenic magnetic nanoparticles
Biosensors. 2022, 12 (10), 789. doi:10.3390/bios12100789
A Yachkula, O Rozova, T Abashina, M Vainshtein, D Grouzdev, A Bulaev
Attempts to stimulate leaching activity of Acidithiobacillus ferrooxidans strain TFBk
Minerals. 2022, 12 (8), 1051. doi:10.3390/min12081051
OS Samylina, LV Zaitseva, DS Grouzdev, EO Patutina, AA Prokin
Microbialites of the Soda-Saline Laguna de Los Cisnes (Isla Grande, Tierra del Fuego, Chile)
Paleontological Journal. 2022, 56 (4), 448-461. doi:10.1134/S0031030122040104
KG Gareev, DS Grouzdev, VV Koziaeva, NO Sitkov, H Gao, TM Zimina, M Shevtsov
Biomimetic nanomaterials: diversity, technology, and biomedical applications
Nanomaterials. 2022; 12(14):2485. doi: 10.3390/nano12142485
M Uzun, V Koziaeva, M Dziuba, P Leão, M Krutkina, D Grouzdev
Detection of interphylum transfers of the magnetosome gene cluster in magnetotactic bacteria
Frontiers in Microbiology. 2022; 13:945734. doi: 10.3389/fmicb.2022.945734
Yu V Litti, MA Potekhina, EA Zhuravleva, AV Vishnyakova, DS Gruzdev, AA Kovalev, DA Kovalev, IV Katraeva, SN Parshina.
Dark fermentative hydrogen production from simple sugars and various wastewaters by a newly isolated Thermoanaerobacterium thermosaccharolyticum SP-H2
International Journal of Hydrogen Energy. 2022. doi:10.1016/j.ijhydene.2022.05.235
TP Tourova, DS Sokolova, EM Semenova, AP Ershov, DS Grouzdev, TN Nazina
Genomic and physiological characterization of halophilic bacteria of the genera Halomonas and Marinobacter from petroleum reservoirs
Microbiology. 2022; 91(3):235-248. doi:10.1134/S0026261722300038
EM Semenova, DS Grouzdev, DS Sokolova, TP Tourova, AB Poltaraus, NV Potekhina, PN Shishina, MA Bolshakova, AN Avtukh, EA Ianutsevich, VM Tereshina, TN Nazina
Physiological and genomic characterization of Actinotalea subterranea sp. nov. from oil-degrading methanogenic enrichment and reclassification of the family Actinotaleaceae
Microorganisms. 2022; 10(2):378. doi:10.3390/microorganisms10020378
M Pabst, DS Grouzdev, CE Lawson, HBC Kleikamp, C de Ram, R Louwen, YM Lin, S Lücker, MCM van Loosdrecht, M Laureni
A general approach to explore prokaryotic protein glycosylation reveals the unique surface layer modulation of an anammox bacterium
The ISME Journal. 2022; 16, 346–357. doi:10.1038/s41396-021-01073-y
Ancylobacter moscoviensis sp. nov., novel facultatively methylotrophic bacteria from activated sludge and the reclassification of Starkeya novella (Starkey 1934) Kelly et al. 2000 as Ancylobacter novellus comb. nov., Starkeya koreensis Im et al. 2006 as Ancylobacter koreensis comb.nov., Angulomicrobium tetraedrale Vasil'eva et al. 1986 as Ancylobacter tetraedralis comb. nov., Angulomicrobium amanitiforme Fritz et al. 2004 as Ancylobacter amanitiformis comb. nov., and Methylorhabdus multivorans Doronina et al. 1996 as Ancylobacter multivorans comb. nov., and emended description of the genus Ancylobacter
Antonie van Leeuwenhoek. 2022. doi: 10.1007/s10482-022-01788-8
TL Babich, DS Grouzdev, DS Sokolova, TP Tourova, AB Poltaraus, TN Nazina
Genome analysis of Pollutimonas subterranea gen. nov., sp. nov. and Pollutimonas nitritireducens sp. nov., isolated from nitrate- and radionuclide-contaminated groundwater, and transfer of several Pusillimonas species into three new genera Allopusillimonas, Neopusillimonas, and Mesopusillimonas
Antonie van Leeuwenhoek. 2022. doi: 10.1007/s10482-022-01781-1
L Vasilyeva, D Grouzdev, V Koziaeva, Y Berestovskaya, A Novikov, N Pimenov
Prosthecodimorpha staleyi gen. nov., sp. nov., novel prosthecate bacteria within the family Ancalomicrobiaceae and reclassification of the polyphyletic genus Prosthecomicrobium
Microbiology. 2022, 91 (5), 479-488. doi:10.1134/S0026261722601105
D Grouzdev, V Gaisin, O Lunina, M Krutkina, E Krasnova, D Voronov, R Baslerov, P Sigalevich, A Savvichev, V Gorlenko
Microbial communities of stratified aquatic ecosystems of Kandalaksha Bay (White Sea) shed light on the evolutionary history of green and brown morphotypes of Chlorobiota
FEMS Microbiology Ecology. 2022, 98 (10), fiac103. doi:10.1093/femsec/fiac103
TM Zimina, NO Sitkov, KG Gareev, V Fedorov, D Grouzdev, V Koziaeva, H Gao, SE Combs, M Shevtsov
Biosensors and drug delivery in oncotheranostics using inorganic synthetic and biogenic magnetic nanoparticles
Biosensors. 2022, 12 (10), 789. doi:10.3390/bios12100789
A Yachkula, O Rozova, T Abashina, M Vainshtein, D Grouzdev, A Bulaev
Attempts to stimulate leaching activity of Acidithiobacillus ferrooxidans strain TFBk
Minerals. 2022, 12 (8), 1051. doi:10.3390/min12081051
OS Samylina, LV Zaitseva, DS Grouzdev, EO Patutina, AA Prokin
Microbialites of the Soda-Saline Laguna de Los Cisnes (Isla Grande, Tierra del Fuego, Chile)
Paleontological Journal. 2022, 56 (4), 448-461. doi:10.1134/S0031030122040104
KG Gareev, DS Grouzdev, VV Koziaeva, NO Sitkov, H Gao, TM Zimina, M Shevtsov
Biomimetic nanomaterials: diversity, technology, and biomedical applications
Nanomaterials. 2022; 12(14):2485. doi: 10.3390/nano12142485
M Uzun, V Koziaeva, M Dziuba, P Leão, M Krutkina, D Grouzdev
Detection of interphylum transfers of the magnetosome gene cluster in magnetotactic bacteria
Frontiers in Microbiology. 2022; 13:945734. doi: 10.3389/fmicb.2022.945734
Yu V Litti, MA Potekhina, EA Zhuravleva, AV Vishnyakova, DS Gruzdev, AA Kovalev, DA Kovalev, IV Katraeva, SN Parshina.
Dark fermentative hydrogen production from simple sugars and various wastewaters by a newly isolated Thermoanaerobacterium thermosaccharolyticum SP-H2
International Journal of Hydrogen Energy. 2022. doi:10.1016/j.ijhydene.2022.05.235
TP Tourova, DS Sokolova, EM Semenova, AP Ershov, DS Grouzdev, TN Nazina
Genomic and physiological characterization of halophilic bacteria of the genera Halomonas and Marinobacter from petroleum reservoirs
Microbiology. 2022; 91(3):235-248. doi:10.1134/S0026261722300038
EM Semenova, DS Grouzdev, DS Sokolova, TP Tourova, AB Poltaraus, NV Potekhina, PN Shishina, MA Bolshakova, AN Avtukh, EA Ianutsevich, VM Tereshina, TN Nazina
Physiological and genomic characterization of Actinotalea subterranea sp. nov. from oil-degrading methanogenic enrichment and reclassification of the family Actinotaleaceae
Microorganisms. 2022; 10(2):378. doi:10.3390/microorganisms10020378
M Pabst, DS Grouzdev, CE Lawson, HBC Kleikamp, C de Ram, R Louwen, YM Lin, S Lücker, MCM van Loosdrecht, M Laureni
A general approach to explore prokaryotic protein glycosylation reveals the unique surface layer modulation of an anammox bacterium
The ISME Journal. 2022; 16, 346–357. doi:10.1038/s41396-021-01073-y
TN Nazina, DS Grouzdev, SK Bidzhieva, H König
Parasphaerochaeta
Bergey's Manual of Systematics of Archaea and Bacteria. 2021. doi:10.1002/9781118960608.gbm020389
TN Nazina, SK Bidzhieva, DS Grouzdev, FE Löffler
Sphaerochaeta
Bergey's Manual of Systematics of Archaea and Bacteria. 2021. doi:10.1002/9781118960608.gbm02038
EN Tikhonova, DS Grouzdev, AN Avtukh, IK Kravchenko
Methylocystis silviterrae sp.nov., a high-affinity methanotrophic bacterium isolated from the boreal forest soil
International Journal of Systematic and Evolutionary Microbiology. 2021; 12 (71). doi:10.1099/ijsem.0.005166
KG Gareev, DS Grouzdev, PV Kharitonskii, DA Kirilenko, A Kosterov, VV Koziaeva, VS Levitskii, G Multhoff, EK Nepomnyashchaya, AV Nikitin, A Nikitina, ES Sergienko, SM Sukharzhevskii, EI Terukov, VV Trushlyakova, M Shevtsov
Magnetic properties of bacterial magnetosomes produced by Magnetospirillum caucaseum SO-1
Microorganisms. 2021, 9(9), 1854. doi:10.3390/microorganisms9091854
DS Sokolova, EM Semenova, DS Grouzdev, SK Bidzhieva, TL Babich, NG Loiko, AP Ershov, VV Kadnikov, AV Beletsky, AV Mardanov, NS Zhaparov, TN Nazina
Sulfidogenic microbial communities of the Uzen high-temperature oil field in Kazakhstan
Microorganisms. 2021, 9(9), 1818. doi:10.3390/microorganisms9091818
EN Tikhonova, DS Grouzdev, IK Kravchenko
Xanthobacter oligotrophicus sp.nov., isolated from paper mill sewage
International Journal of Systematic and Evolutionary Microbiology. 2021; 8 (71). doi:10.1099/ijsem.0.004972
IA Bryantseva, DS Grouzdev, MS Krutkina, AA Ashikhmin, NA Kostrikina, VV Koziaeva, VM Gorlenko
'Candidatus Chloroploca mongolica' sp. nov. a new mesophilic filamentous anoxygenic phototrophic bacterium
FEMS Microbiology Letters. 2021. doi:10.1093/femsle/fnab107
KG Gareev, DS Grouzdev, PV Kharitonskii, A Kosterov, VV Koziaeva, ES Sergienko, MA Shevtsov
Magnetotactic bacteria and magnetosomes: basic properties and applications
Magnetochemistry. 2021;7, 86. doi:10.3390/magnetochemistry7060086
V Kevbrin, Y Boltyanskaya, V Koziaeva, M Uzun, D Grouzdev.
Alkalicaulis satelles gen. nov., sp. nov., a novel haloalkaliphile isolated from a laboratory culture cyanobacterium Geitlerinema species and proposals of Maricaulaceae fam. nov., Robiginitomaculaceae fam. nov., Maricaulales ord. nov. and Hyphomonadales ord. nov.
International Journal of Systematic and Evolutionary Microbiology. 2021; 1 (71). doi:10.1099/ijsem.0.004614
Parasphaerochaeta
Bergey's Manual of Systematics of Archaea and Bacteria. 2021. doi:10.1002/9781118960608.gbm020389
TN Nazina, SK Bidzhieva, DS Grouzdev, FE Löffler
Sphaerochaeta
Bergey's Manual of Systematics of Archaea and Bacteria. 2021. doi:10.1002/9781118960608.gbm02038
EN Tikhonova, DS Grouzdev, AN Avtukh, IK Kravchenko
Methylocystis silviterrae sp.nov., a high-affinity methanotrophic bacterium isolated from the boreal forest soil
International Journal of Systematic and Evolutionary Microbiology. 2021; 12 (71). doi:10.1099/ijsem.0.005166
KG Gareev, DS Grouzdev, PV Kharitonskii, DA Kirilenko, A Kosterov, VV Koziaeva, VS Levitskii, G Multhoff, EK Nepomnyashchaya, AV Nikitin, A Nikitina, ES Sergienko, SM Sukharzhevskii, EI Terukov, VV Trushlyakova, M Shevtsov
Magnetic properties of bacterial magnetosomes produced by Magnetospirillum caucaseum SO-1
Microorganisms. 2021, 9(9), 1854. doi:10.3390/microorganisms9091854
DS Sokolova, EM Semenova, DS Grouzdev, SK Bidzhieva, TL Babich, NG Loiko, AP Ershov, VV Kadnikov, AV Beletsky, AV Mardanov, NS Zhaparov, TN Nazina
Sulfidogenic microbial communities of the Uzen high-temperature oil field in Kazakhstan
Microorganisms. 2021, 9(9), 1818. doi:10.3390/microorganisms9091818
EN Tikhonova, DS Grouzdev, IK Kravchenko
Xanthobacter oligotrophicus sp.nov., isolated from paper mill sewage
International Journal of Systematic and Evolutionary Microbiology. 2021; 8 (71). doi:10.1099/ijsem.0.004972
IA Bryantseva, DS Grouzdev, MS Krutkina, AA Ashikhmin, NA Kostrikina, VV Koziaeva, VM Gorlenko
'Candidatus Chloroploca mongolica' sp. nov. a new mesophilic filamentous anoxygenic phototrophic bacterium
FEMS Microbiology Letters. 2021. doi:10.1093/femsle/fnab107
KG Gareev, DS Grouzdev, PV Kharitonskii, A Kosterov, VV Koziaeva, ES Sergienko, MA Shevtsov
Magnetotactic bacteria and magnetosomes: basic properties and applications
Magnetochemistry. 2021;7, 86. doi:10.3390/magnetochemistry7060086
V Kevbrin, Y Boltyanskaya, V Koziaeva, M Uzun, D Grouzdev.
Alkalicaulis satelles gen. nov., sp. nov., a novel haloalkaliphile isolated from a laboratory culture cyanobacterium Geitlerinema species and proposals of Maricaulaceae fam. nov., Robiginitomaculaceae fam. nov., Maricaulales ord. nov. and Hyphomonadales ord. nov.
International Journal of Systematic and Evolutionary Microbiology. 2021; 1 (71). doi:10.1099/ijsem.0.004614
TN Nazina, SK Bidzhieva, DS Grouzdev, DS Sokolova, TP Tourova, SN Parshina, AN Avtukh, AB Poltaraus, AK Talybly
Soehngenia longivitae sp. nov., a fermenting bacterium isolated from a petroleum reservoir in Azerbaijan, and emended description of the Genus Soehngenia
Microorganisms. 2020; 8(12):1967. doi:10.1128/MRA.01255-20
DS Grouzdev, DS Sokolova, AB Poltaraus, TN Nazina
Draft genome sequence of Halomonas titanicae Strain TAT1, a hydrocarbon-oxidizing halophilic bacterium isolated from a petroleum reservoir in Russia
Microbiology Resource Announcements. 2020; 9(48), e01255-20. doi:10.3390/microorganisms8121967
Soehngenia longivitae sp. nov., a fermenting bacterium isolated from a petroleum reservoir in Azerbaijan, and emended description of the Genus Soehngenia
Microorganisms. 2020; 8(12):1967. doi:10.1128/MRA.01255-20
DS Grouzdev, DS Sokolova, AB Poltaraus, TN Nazina
Draft genome sequence of Halomonas titanicae Strain TAT1, a hydrocarbon-oxidizing halophilic bacterium isolated from a petroleum reservoir in Russia
Microbiology Resource Announcements. 2020; 9(48), e01255-20. doi:10.3390/microorganisms8121967
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